PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04250A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 282aa    MW: 30957.7 Da    PI: 4.4157
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04250AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-171466148
                               TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd++l d+++++G g        ++Ia+ ++ gRt++++k++w+++l
  Oropetium_20150105_04250A 14 KGPWTPEEDQKLMDYIQKHGHGswralpKLAAIAKQLP-GRTDNEIKNFWNTHL 66
                               79********************8888888889999999.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.9E-17976IPR009057Homeodomain-like
PROSITE profilePS5129422.812970IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-251267IPR009057Homeodomain-like
SMARTSM007175.6E-151368IPR001005SANT/Myb domain
PfamPF002493.8E-161466IPR001005SANT/Myb domain
CDDcd001679.48E-161666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLMDYIQ KHGHGSWRAL PKLAAIAKQL PGRTDNEIKN  60
FWNTHLKKKL IQMGFDPMTH RPRTDFFAAL PQLIALANLR QLVEQRPWDD HTAMLQAEAV  120
QATKLQYLQS LLQSAASIAT SPSSSSINTI PSDQEQICLL SPPQMSSLSS LPSPSFLESI  180
SAQDISAGQL PDIQMPSSFF ELPISDDANQ NTDYAANGSL EGDNSTPTKT LLMSENSLPP  240
LADFPISNLG DACSTSSCDD SNTQFPSWPE LFDQQFLNEF A*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953959.11e-156PREDICTED: transcription factor MYB39
TrEMBLK3YU391e-156K3YU39_SETIT; Uncharacterized protein
STRINGSi017785m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-57myb domain protein 93